AWS omics documentation change
Summary
Updated workflow setup documentation with reorganized requirements section, clarified workflow definition file format requirements, and restructured optional components
Security assessment
Changes focus on clarifying technical requirements and documentation structure without mentioning security vulnerabilities, access controls, or authentication mechanisms. The mention of private Amazon ECR repositories was already present in previous version and not newly added.
Diff
diff --git a/omics/latest/dev/workflows-setup.md b/omics/latest/dev/workflows-setup.md index cf6f27b4c..0de983fd3 100644 --- a//omics/latest/dev/workflows-setup.md +++ b//omics/latest/dev/workflows-setup.md @@ -9 +9 @@ - * **Input data** – Input data for the workflow, stored in an Amazon S3 bucket or a HealthOmics sequence store. For more information, see [HealthOmics storage](./sequence-stores.html). + * **Workflow definition file** : A workflow definition file written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements. The workflow definition file must be in `.zip` format. For more information, see [Workflow definition files](./workflow-definition-files.html) in HealthOmics. @@ -11 +11 @@ - * **Workflow definition files** – Define your workflow in one or more workflow definition files, written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements. + * **Parameter template file** (optional): A parameter template file written in JSON. Create the file to define the run parameters, or HealthOmics generates the parameter template for you. For more information, see [Parameter template files for HealthOmics workflows](./parameter-templates.html). @@ -13 +13 @@ - * (Optional) **Parameter template** – You can create a parameter template file that defines the run parameters, or HealthOmics can generate the parameter template for you. + * **Amazon ECR container images** : Create container images for the workflow and store them in a private Amazon ECR repository. @@ -15,3 +15 @@ - * **Amazon ECR container images** – Create one or more container images for the workflow. Store the images in a private Amazon ECR repository. - - * (Optional) **Sentieon licenses** – Request a Sentieon license if you plan to use Sentieon software in a private workflow. + * **Sentieon licenses** (optional): Request a Sentieon license to use the Sentieon software in private workflows.